I am trying to run cosmomc on a virtual machine having Ubuntu 22.04 and gfortran version 11.4.0. The MPI version is mpiexec (OpenRTE) 4.1.2.
The compilation of cosmomc is OK without any error. When I am running it, I am getting segmentation fault. I got the following output after running cosmomc_debug.
Code: Select all
export OMP_NUM_THREADS=0
nohup mpiexec -np 4 ./cosmomc_debug test_planck.ini >out.txt &
Number of MPI processes: 4
file_root:test
Random seeds: 26005, 25593 rand_inst: 2
Random seeds: 26105, 25593 rand_inst: 3
Random seeds: 26205, 25593 rand_inst: 4
Random seeds: 25905, 25593 rand_inst: 1
Using clik with likelihood file ./data/clik_14.0/hi_l/plik/plik_rd12_HM_v22b_TTTEEE.clik
----
clik version plc_3.1
smica
Checking likelihood './data/clik_14.0/hi_l/plik/plik_rd12_HM_v22b_TTTEEE.clik' on test data. got -1172.47 expected -1172.47 (diff -4.34056e-07)
----
TT from l=0 to l= 2508
EE from l=0 to l= 2508
TE from l=0 to l= 2508
----
clik version plc_3.1
gibbs_gauss b13c8fda-1837-41b5-ae2d-78d6b723fcf1
Checking likelihood './data/clik_14.0/low_l/commander/commander_dx12_v3_2_29.clik' on test data. got -11.6257 expected -11.6257 (diff -1.07424e-09)
----
TT from l=0 to l= 29
Initializing SimAll
----
clik version plc_3.1
simall simall_EE_BB_TE
Checking likelihood './data/clik_14.0/low_l/simall/simall_100x143_offlike5_EE_Aplanck_B.clik' on test data. got -197.99 expected -197.99 (diff -4.1778e-08)
----
EE from l=0 to l= 29
----
clik version plc_3.1
smica
----
clik version plc_3.1
smica
Checking likelihood './data/clik_14.0/hi_l/plik/plik_rd12_HM_v22b_TTTEEE.clik' on test data. got -1172.47 expected -1172.47 (diff -4.34056e-07)
----
TT from l=0 to l= 2508
EE from l=0 to l= 2508
TE from l=0 to l= 2508
----
clik version plc_3.1
gibbs_gauss b13c8fda-1837-41b5-ae2d-78d6b723fcf1
Checking likelihood './data/clik_14.0/low_l/commander/commander_dx12_v3_2_29.clik' on test data. got -11.6257 expected -11.6257 (diff -1.07424e-09)
----
TT from l=0 to l= 29
Checking likelihood './data/clik_14.0/hi_l/plik/plik_rd12_HM_v22b_TTTEEE.clik' on test data. got -1172.47 expected -1172.47 (diff -4.34056e-07)
----
TT from l=0 to l= 2508
EE from l=0 to l= 2508
TE from l=0 to l= 2508
----
clik version plc_3.1
gibbs_gauss b13c8fda-1837-41b5-ae2d-78d6b723fcf1
Checking likelihood './data/clik_14.0/low_l/commander/commander_dx12_v3_2_29.clik' on test data. got -11.6257 expected -11.6257 (diff -1.07424e-09)
----
TT from l=0 to l= 29
Initializing SimAll
Initializing SimAll
----
clik version plc_3.1
simall simall_EE_BB_TE
----
clik version plc_3.1
simall simall_EE_BB_TE
Checking likelihood './data/clik_14.0/low_l/simall/simall_100x143_offlike5_EE_Aplanck_B.clik' on test data. got -197.99 expected -197.99 (diff -4.1778e-08)
----
EE from l=0 to l= 29
Checking likelihood './data/clik_14.0/low_l/simall/simall_100x143_offlike5_EE_Aplanck_B.clik' on test data. got -197.99 expected -197.99 (diff -4.1778e-08)
----
EE from l=0 to l= 29
----
clik version plc_3.1
smica
Checking likelihood './data/clik_14.0/hi_l/plik/plik_rd12_HM_v22b_TTTEEE.clik' on test data. got -1172.47 expected -1172.47 (diff -4.34056e-07)
----
TT from l=0 to l= 2508
EE from l=0 to l= 2508
TE from l=0 to l= 2508
Clik will run with the following nuisance parameters:
A_cib_217^@
cib_index^@
xi_sz_cib^@
A_sz^@
ps_A_100_100^@
ps_A_143_143^@
ps_A_143_217^@
ps_A_217_217^@
ksz_norm^@
gal545_A_100^@
gal545_A_143^@
gal545_A_143_217^@
gal545_A_217^@
galf_EE_A_100^@
galf_EE_A_100_143^@
galf_EE_A_100_217^@
galf_EE_A_143^@
galf_EE_A_143_217^@
galf_EE_A_217^@
galf_EE_index^@
galf_TE_A_100^@
galf_TE_A_100_143^@
galf_TE_A_100_217^@
galf_TE_A_143^@
galf_TE_A_143_217^@
galf_TE_A_217^@
galf_TE_index^@
A_cnoise_e2e_100_100_EE^@
A_cnoise_e2e_143_143_EE^@
A_cnoise_e2e_217_217_EE^@
A_sbpx_100_100_TT^@
A_sbpx_143_143_TT^@
A_sbpx_143_217_TT^@
A_sbpx_217_217_TT^@
A_sbpx_100_100_EE^@
A_sbpx_100_143_EE^@
A_sbpx_100_217_EE^@
A_sbpx_143_143_EE^@
A_sbpx_143_217_EE^@
A_sbpx_217_217_EE^@
calib_100T^@
calib_217T^@
calib_100P^@
calib_143P^@
calib_217P^@
A_pol^@
A_planck^@
Using clik with likelihood file ./data/clik_14.0/low_l/commander/commander_dx12_v3_2_29.clik
----
clik version plc_3.1
gibbs_gauss b13c8fda-1837-41b5-ae2d-78d6b723fcf1
Checking likelihood './data/clik_14.0/low_l/commander/commander_dx12_v3_2_29.clik' on test data. got -11.6257 expected -11.6257 (diff -1.07424e-09)
----
TT from l=0 to l= 29
Clik will run with the following nuisance parameters:
A_planck^@
Using clik with likelihood file ./data/clik_14.0/low_l/simall/simall_100x143_offlike5_EE_Aplanck_B.clik
Initializing SimAll
----
clik version plc_3.1
simall simall_EE_BB_TE
Checking likelihood './data/clik_14.0/low_l/simall/simall_100x143_offlike5_EE_Aplanck_B.clik' on test data. got -197.99 expected -197.99 (diff -4.1778e-08)
----
EE from l=0 to l= 29
Clik will run with the following nuisance parameters:
A_planck^@
read jla dataset data/Pantheon/full_long.dataset
reading WL data set: DES_1YR_final
read jla dataset data/Pantheon/full_long.dataset
reading WL data set: DES_1YR_final
read jla dataset data/Pantheon/full_long.dataset
reading WL data set: DES_1YR_final
read jla dataset data/Pantheon/full_long.dataset
reading BAO data set: 6DF
reading BAO data set: MGS
reading BAO data set: DR12BAO
reading WL data set: DES_1YR_final
Doing non-linear Pk: T
Doing CMB lensing: T
Doing non-linear lensing: T
TT lmax = 2508
EE lmax = 2508
ET lmax = 2508
BB lmax = 2500
PP lmax = 2500
lmax_computed_cl = 2508
Computing tensors: F
max_eta_k = 14000.0000
transfer kmax = 10.1999998
adding parameters for: smicadx12_Dec5_ftl_mv2_ndclpp_p_teb_consext8
adding parameters for: 6DF
adding parameters for: JLA
adding parameters for: DR12BAO
adding parameters for: MGS
adding parameters for: commander_dx12_v3_2_29
adding parameters for: simall_100x143_offlike5_EE_Aplanck_B
adding parameters for: BK15_dust
adding parameters for: plik_rd12_HM_v22b_TTTEEE
adding parameters for: DES_1YR_final
Fast divided into 3 blocks
Block breaks at: 15 35
54 parameters ( 7 slow ( 0 semi-slow), 47 fast ( 0 semi-fast))
Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
Backtrace for this error:
#0 0x14fb05f72960 in ???
#1 0x14fb05f71ac5 in ???
#2 0x14fb05c1551f in ???
at ./signal/../sysdeps/unix/sysv/linux/x86_64/libc_sigaction.c:0
#3 0x55685f96f47e in __fileutils_MOD_writeitemtxt
at ../FileUtils.f90:1572
#4 0x55685f97029d in __fileutils_MOD_writeinlineitem
at ../FileUtils.f90:926
#5 0x55685f970360 in __fileutils_MOD_writeinlineitems
at ../FileUtils.f90:903
#6 0x55685f9702fa in __fileutils_MOD_writeitemstxt
at ../FileUtils.f90:917
#7 0x55685f55ee56 in __paramnames_MOD_paramnames_writefile
at /home/user/akhilesh/CosmoMC-master/source/ObjectParamNames.f90:398
#8 0x55685f5924c7 in __baseparameters_MOD_tbaseparameters_outputparamnames
at /home/user/akhilesh/CosmoMC-master/source/BaseParameters.f90:264
#9 0x55685f77499b in cosmomc
at /home/user/akhilesh/CosmoMC-master/source/driver.F90:210
#10 0x55685f775f8c in main
at /home/user/akhilesh/CosmoMC-master/source/driver.F90:3
--------------------------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpiexec noticed that process rank 0 with PID 0 on node ubuntu204ltsserver exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
I tried with running the command
Code: Select all
ulimit -s unlimited before running cosmomc, but the error remains.
Can anyone please help me to resolve this issue.
Thanks.