COBAYA: R-1 not improving
Posted: January 30 2024
Hello,
I'm running the following python file with version 3.4.1 of COBAYA, and version 3.2.1 of CLASS:
At the beginning, the chains were running smoothly towards convergence. Checking the .progress file, I could see that R-1 was being updated every ~4-8 hrs. However, since 10 days ago, R-1 has been stuck and it's not being updated. All chain files are collecting new data points, yet no update on the convergence test. What could be the problem?
Thanks in advance for the replies!
I'm running the following python file with version 3.4.1 of COBAYA, and version 3.2.1 of CLASS:
Code: Select all
info={
"params": {
"clamp": {
"latex": "10^9 A_\\mathrm{s} e^{-2\\tau}",
"derived": "lambda A_s, tau_reio: 1e9*A_s*np.exp(-2*tau_reio)"
},
"A": {
"latex": "10^9 A_\\mathrm{s}",
"derived": "lambda A_s: 1e9*A_s"
},
"Omega_m": {
"latex": "\\Omega_\\mathrm{m}"
},
"Omega_Lambda": {
"latex": "\\Omega_\\Lambda"
},
"tau_reio": {
"prior": {"min": 0.01, "max": 0.8},
"proposal": 0.003,
"ref": {
"loc": 0.055,
"scale": 0.006,
"dist": "norm"
},
"latex": "\\tau_\\mathrm{reio}"
},
"age": {
"latex": "{\\rm{Age}}/\\mathrm{Gyr}"
},
"n_s": {
"prior": {
"max": 1.2,
"min": 0.8
},
"proposal": 0.002,
"ref": {
"loc": 0.965,
"scale": 0.004,
"dist": "norm"
},
"latex": "n_\\mathrm{s}"
},
"s8h5": {
"latex": "\\sigma_8/h^{0.5}",
"derived": "lambda sigma8, H0: sigma8*(H0*1e-2)**(-0.5)"
},
############### IDM PARAMS BEGIN ###############################
"m_idm": {
"latex": "m_\\mathrm{idm}",
"value": 2e9
},
"xi_idr":{
"prior": {
"max": 0.5,
"min": 0
},
"proposal": 0.05,
"ref": {
"loc": 0.1,
"scale": 0.05,
"dist": "norm"
},
"latex": r"\xi"
},
"log10_a_idm_dr_p1":{
"prior":{
"min": 0,
"max": 8
},
"ref":{"dist": "norm","loc": 4, "scale": 3},
"proposal": 1.5,
"drop": True,
"latex": r"\log_{10}(\mathrm{a}_\mathrm{dark}\mathrm{Mpc})"
},
"a_idm_dr": {
"value": "lambda log10_a_idm_dr_p1: 10**(log10_a_idm_dr_p1)-1.0",
"latex": "\mathrm{a}_\mathrm{dark}"
},
################ IDM PARAMS FINISH ########################
"sigma8": {
"latex": "\\sigma_8"
},
"z_reio": {
"latex": "z_\\mathrm{re}"
},
"omega_b": {
"prior": {
"max": 0.1,
"min": 0.005
},
"proposal": 0.0001,
"ref": {
"loc": 0.0224,
"scale": 0.0001,
"dist": "norm"
},
"latex": "\\Omega_\\mathrm{b} h^2"
},
"rs_drag": {
"latex": "r_\\mathrm{drag}"
},
"omega_cdm": {
"prior": {
"max": 0.99,
"min": 0.001
},
"proposal": 0.0005,
"ref": {
"loc": 0.12,
"scale": 0.001,
"dist": "norm"
},
"latex": "\\Omega_\\mathrm{c} h^2"
},
"s8omegamp25": {
"latex": "\\sigma_8 \\Omega_\\mathrm{m}^{0.25}",
"derived": "lambda sigma8, Omega_m: sigma8*Omega_m**0.25"
},
"theta_s_1e2": {
"prior": {
"max": 10,
"min": 0.5
},
"proposal": 0.0002,
"drop": True,
"ref": {
"loc": 1.0416,
"scale": 0.0004,
"dist": "norm"
},
"latex": "100\\theta_\\mathrm{s}"
},
"H0": {
"latex": "H_0"
},
"m_ncdm": {
"value": 0.02,
"renames": "mnu"
},
"m_ncdm_tot":{
"latex": r'\Sigma\mathrm{m}_{\nu}\mathrm(eV)'
},
"YHe": {
"latex": "Y_\\mathrm{P}"
},
"s8omegamp5": {
"latex": "\\sigma_8 \\Omega_\\mathrm{m}^{0.5}",
"derived": "lambda sigma8, Omega_m: sigma8*Omega_m**0.5"
},
"omegamh2": {
"latex": "\\Omega_\\mathrm{m} h^2",
"derived": "lambda Omega_m, H0: Omega_m*(H0/100)**2"
},
"100*theta_s": {
"derived": False,
"value": "lambda theta_s_1e2: theta_s_1e2"
},
"logA": {
"prior": {
"max": 3.91,
"min": 1.61
},
"proposal": 0.001,
"drop": True,
"ref": {
"loc": 3.05,
"scale": 0.001,
"dist": "norm"
},
"latex": "\\log(10^{10} A_\\mathrm{s})"
},
"A_s": {
"latex": "A_\\mathrm{s}",
"value": "lambda logA: 1e-10*np.exp(logA)"
}
},
"theory": {
"classy": {
"extra_args": {
"nindex_idm_dr": 4.0,
"stat_f_idr": 0.875, #1
"idr_nature": "free_streaming", # "fluid"
######## PRECISION PARAMS ##########
#"idm_dr_tight_coupling_trigger_tau_c_over_tau_k":, # when to switch off the dark-tight-coupling approximation, first condition
#"idm_dr_tight_coupling_trigger_tau_c_over_tau_h":, # when to switch off the dark-tight-coupling approximation, second condition
"output": "tCl,pCl,lCl",
"f_idm": 1,
"N_ncdm": 1,
"N_ur": 0.00441,
"nonlinear_min_k_max": 20,
"non linear": "halofit",
"deg_ncdm": 3,
},
"path": "home/Codes/code/classy/",
"ignore_obsolete": True
}
},
"sampler": {
"mcmc": {
"Rminus1_cl_stop": 0.2,
"drag": True,
"Rminus1_stop": 0.02,
"covmat": 'home/IDM/DM_DR/ALL_005/CLASS.covmat',
"measure_speeds": True,
"oversample_power": 0.4,
"output_every": 1,
"proposal_scale": 1,
"max_tries": 1.e4
}
},
"resume": True,
"debug": True,
"timing": True,
"output": "home/IDM/DM_DR/ALL_1/CLASS",
"likelihood": {
"SPT3G_Y1.TTTEEE": {
"python_path": "home/spt3g"
},
"planck_2018_lowl.TT": {},
"planck_2018_lowl.EE": {},
"planck_2018_lensing.clik": {},
"planck_2018_highl_plik.TTTEEE": {},
"sn.pantheon": {},
"bao.sixdf_2011_bao": {},
"bao.sdss_dr7_mgs": {},
"bao.sdss_dr16_baoplus_lrg": {},
"bao.sdss_dr16_lrg_bao_dmdh": {},
#"des_y1.joint": {}
}
}
import warnings
from sklearn.exceptions import DataConversionWarning
warnings.filterwarnings(action='ignore', category=DataConversionWarning)
from sklearn.exceptions import ConvergenceWarning
warnings.filterwarnings(action='ignore', category=ConvergenceWarning)
from cobaya.run import run
import cobaya
updated_info, sampler = run(info)
Thanks in advance for the replies!